2DJV Protein Binding date Apr 05, 2006
title Solution Structures Of The Whep-Trs Domain Of Human Methiony Synthetase
authors M.Sato, A.Sasagawa, N.Tochio, S.Koshiba, M.Inoue, T.Kigawa, S.Yoko Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Methionyl-Trna Synthetase
Chain: A
Fragment: Whep-Trs Domain
Synonym: Methionine--Trna Ligase, Metrs
Ec: 6.1.1.10
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mars
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050704-14
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand
enzyme Ligase E.C.6.1.1.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (397 Kb) [Save to disk]
  • Biological Unit Coordinates (2djv.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 2DJV
  • Original NMR restraints for 2DJV from PDB
  • Retrieve 2DJV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DJV from S2C, [Save to disk]
    • View 2DJV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DJV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DJV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2djv_A] [2djv]
  • SWISS-PROT database: [P56192]
  • Domain organization of [SYMC_HUMAN] by SWISSPFAM
  • Domain found in 2DJV: [WHEP-TRS ] by SMART
    • Other resources with information on 2DJV
  • Community annotation for 2DJV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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