2DK3 Protein Binding date Apr 06, 2006
title Solution Structure Of Mib-Herc2 Domain In Hect Domain Contai Protein 1
authors F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama, Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: E3 Ubiquitin-Protein Ligase Hectd1
Chain: A
Fragment: Mib-Herc2 Domain
Synonym: Hect Domain-Containing Protein 1, E3 Ligase For In Receptor, Eulir;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hectd1, Kiaa1131
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050719-02
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (417 Kb) [Save to disk]
  • Biological Unit Coordinates (2dk3.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2DK3
  • Original NMR restraints for 2DK3 from PDB
  • Retrieve 2DK3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DK3 from S2C, [Save to disk]
    • View 2DK3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DK3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DK3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dk3] [2dk3_A]
  • SWISS-PROT database: [Q9ULT8]
  • Domain organization of [HECD1_HUMAN] by SWISSPFAM
    • Other resources with information on 2DK3
  • Community annotation for 2DK3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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