2DKF date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MSE, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, B, C, A
  • nuclease activity
  • endonuclease activity


    • Primary referenceCrystal structure of TTHA0252 from Thermus thermophilus HB8, a RNA degradation protein of the metallo-beta-lactamase superfamily., Ishikawa H, Nakagawa N, Kuramitsu S, Masui R, J Biochem (Tokyo). 2006 Oct;140(4):535-42. Epub 2006 Aug 31. PMID:16945939
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk]
  • Biological Unit Coordinates (2dkf.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (2dkf.pdb2.gz) 70 Kb
  • Biological Unit Coordinates (2dkf.pdb3.gz) 70 Kb
  • Biological Unit Coordinates (2dkf.pdb4.gz) 70 Kb
  • Biological Unit Coordinates (2dkf.pdb5.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 2DKF
  • CSU: Contacts of Structural Units for 2DKF
  • Likely Quarternary Molecular Structure file(s) for 2DKF
  • Structure Factors (1042 Kb)
  • Retrieve 2DKF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DKF from S2C, [Save to disk]
  • Re-refined 2dkf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2DKF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dkf] [2dkf_A] [2dkf_B] [2dkf_C] [2dkf_D]
  • SWISS-PROT database: [Q5SLP1]
  • Domains found in 2DKF: [Beta-Casp] [Lactamase_B ] by SMART

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