2DKR Protein Transport date Apr 14, 2006
title Solution Structure Of The Pdz Domain From Human Lin-7 Homolog B
authors T.Suetake, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Lin-7 Homolog B
Chain: A
Fragment: Pdz Domain
Synonym: Lin-7b, Hlin7b, Mammalian Lin-Seven Protein 2, Mals-2, Vertebrate Lin 7 Homolog 2, Veli-2 Protein, Hveli2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lin7b, Mals2, Veli2, Unq3116pro10200
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050516-07
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (447 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DKR
  • Retrieve 2DKR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DKR from S2C, [Save to disk]
  • View 2DKR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DKR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DKR, from MSDmotif at EBI
  • Fold representative 2dkr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dkr_A] [2dkr]
  • SWISS-PROT database: [Q9HAP6]
  • Domain organization of [LIN7B_HUMAN] by SWISSPFAM
  • Domain found in 2DKR: [PDZ ] by SMART
  • Other resources with information on 2DKR
  • Community annotation for 2DKR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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