2DKY Signaling Protein date Apr 14, 2006
title Solution Structure Of The Sam-Domain Of Rho-Gtpase- Activating Protein 7
authors A.K.Goroncy, M.Sato, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Rho-Gtpase-Activating Protein 7
Chain: A
Fragment: Sam-Domain
Synonym: Rho-Type Gtpase-Activating Protein 7, Deleted In Liver Cancer 1 Protein, Dlc-1, Hp Protein, Star-Related Lipid Transfer Protein 12, Stard12, Start Domain- Containing Protein 12;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dlc1, Arhgap7, Kiaa1723, Stard12
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050207-01
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (480 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DKY
  • Original NMR restraints for 2DKY from PDB
  • Retrieve 2DKY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DKY from S2C, [Save to disk]
  • View 2DKY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DKY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DKY, from MSDmotif at EBI
  • Fold representative 2dky from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dky] [2dky_A]
  • SWISS-PROT database: [Q96QB1]
  • Domain organization of [RHG07_HUMAN] by SWISSPFAM
  • Domain found in 2DKY: [SAM ] by SMART
  • Other resources with information on 2DKY
  • Community annotation for 2DKY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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