2DL3 Cell Adhesion, Signaling Protein date Apr 17, 2006
title Solution Structure Of The First Sh3 Domain Of Human Sorbin And Sh3 Domain-Containing Protein 1
authors X.R.Qin, T.Nagashima, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Sorbin And Sh3 Domain-Containing Protein 1
Chain: A
Fragment: Sh3 Domain
Synonym: Ponsin, C-Cbl-Associated Protein, Cap, Sh3 Domain Protein 5, Sh3p12;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sorbs1, Kiaa1296, Sh3d5
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050613-04
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (355 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DL3
  • Original NMR restraints for 2DL3 from PDB
  • Retrieve 2DL3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DL3 from S2C, [Save to disk]
  • View 2DL3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DL3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DL3, from MSDmotif at EBI
  • Fold representative 2dl3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dl3] [2dl3_A]
  • SWISS-PROT database: [Q9BX66]
  • Domain organization of [SRBS1_HUMAN] by SWISSPFAM
  • Domain found in 2DL3: [SH3 ] by SMART
  • Other resources with information on 2DL3
  • Community annotation for 2DL3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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