2DLL Cytokine date Apr 20, 2006
title Solution Structure Of The Irf Domain Of Human Interferon Regulator Factors 4
authors H.P.Zhang, C.Kurosaki, M.Yoshida, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Interferon Regulatory Factor 4
Chain: A
Fragment: Irf Domain, Residues 8-115
Synonym: Irf-4, Lymphocyte-Specific Interferon Regulatory Factor, Lsirf, Nf-Em5, Multiple Myeloma Oncogene 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Irf4, Mum1
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050516-06
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (648 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DLL
  • Retrieve 2DLL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DLL from S2C, [Save to disk]
  • View 2DLL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DLL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DLL, from MSDmotif at EBI
  • Fold representative 2dll from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dll_A] [2dll]
  • SWISS-PROT database: [Q15306]
  • Domain organization of [IRF4_HUMAN] by SWISSPFAM
  • Domain found in 2DLL: [IRF ] by SMART
  • Other resources with information on 2DLL
  • Community annotation for 2DLL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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