2DMH Lipid Binding Protein date Apr 21, 2006
title Solution Structure Of The First C2 Domain Of Human Myoferlin
authors T.Nagashima, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Myoferlin
Chain: A
Fragment: C2 Domain
Synonym: Fer-1-Like Protein 3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fer1l3, Kiaa1207, Myof
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050627-29
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (722 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DMH
  • Original NMR restraints for 2DMH from PDB
  • Retrieve 2DMH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DMH from S2C, [Save to disk]
  • View 2DMH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DMH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DMH, from MSDmotif at EBI
  • Fold representative 2dmh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dmh_A] [2dmh]
  • SWISS-PROT database: [Q9NZM1]
  • Domain organization of [MYOF_HUMAN] by SWISSPFAM
  • Domain found in 2DMH: [C2 ] by SMART
  • Other resources with information on 2DMH
  • Community annotation for 2DMH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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