2DMO Signaling Protein date Apr 22, 2006
title Refined Solution Structure Of The 1st Sh3 Domain From Human Neutrophil Cytosol Factor 2 (Ncf-2)
authors N.Tochio, E.Chikayama, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Neutrophil Cytosol Factor 2
Chain: A
Fragment: Sh3 Domain
Synonym: Ncf-2, Neutrophil Nadph Oxidase Factor 2, 67 Kda Neutrophil Oxidase Factor, P67-Phox, Noxa2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ncf2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040921-05
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
note 2DMO supersedes 1X3V
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (333 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DMO
  • Retrieve 2DMO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DMO from S2C, [Save to disk]
  • View 2DMO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DMO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DMO, from MSDmotif at EBI
  • Fold representative 2dmo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dmo_A] [2dmo]
  • SWISS-PROT database: [P19878]
  • Domain organization of [NCF2_HUMAN] by SWISSPFAM
  • Domain found in 2DMO: [SH3 ] by SMART
  • Alignments of the sequence of 2DMO with the sequences similar proteins can be viewed for 2DMO's classification [NCF2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NCF2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2DMO
  • Community annotation for 2DMO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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