2DMV Ligase date Apr 24, 2006
title Solution Structure Of The Second Ww Domain Of Itchy Homolog Ubiquitin Protein Ligase (Itch)
authors S.Ohnishi, K.Paakkonen, N.Tochio, T.Tomizawa, S.Koshiba, M.Inoue, P.Guntert, T.Kigawa, S.Yokoyama, Riken Structural Genomicspro Initiative (Rsgi)
compound source
Molecule: Itchy Homolog E3 Ubiquitin Protein Ligase
Chain: A
Fragment: Ww Domain
Synonym: Itch, Atrophin-1-Interacting Protein 4, Aip4, Nfe2 Associated Polypeptide 1, Napp1;
Ec: 6.3.2.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itch
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050620-31
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand
enzyme Ligase E.C.6.3.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk]
  • Biological Unit Coordinates (2dmv.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 2DMV
  • Retrieve 2DMV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DMV from S2C, [Save to disk]
    • View 2DMV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DMV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DMV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dmv] [2dmv_A]
  • SWISS-PROT database: [Q96J02]
  • Domain organization of [ITCH_HUMAN] by SWISSPFAM
  • Domain found in 2DMV: [WW ] by SMART
    • Other resources with information on 2DMV
  • Community annotation for 2DMV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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