2DN5 Transcription date Apr 25, 2006
title Solution Structure Of Rsgi Ruh-057, A Gtf2i Domain In Human Cdna
authors Y.Doi-Katayama, H.Hirota, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: General Transcription Factor II-I Repeat Domain- Containing Protein 1;
Chain: A
Fragment: Gtf2i Domain
Synonym: Gtf2i Repeat Domain-Containing Protein 1, Muscle Tfii-I Repeat Domain-Containing Protein 1, General Transcription Factor III, Slow- Muscle-Fiber Enhancer Binding Protein, Use B1-Binding Protein, Mustrd1ben, Williams-Beuren Syndrome Chromosome Region 11 Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Np005676
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050627-08
Other_details: Cell-Free Protein Synthesis (E. Coli)
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (470 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DN5
  • Original NMR restraints for 2DN5 from PDB
  • Retrieve 2DN5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DN5 from S2C, [Save to disk]
  • View 2DN5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DN5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DN5, from MSDmotif at EBI
  • Fold representative 2dn5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dn5] [2dn5_A]
  • SWISS-PROT database: [Q9UHL9]
  • Domain organization of [GT2D1_HUMAN] by SWISSPFAM
  • Other resources with information on 2DN5
  • Community annotation for 2DN5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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