2DN9 Apoptosis, Chaperone date Apr 25, 2006
title Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein
authors N.Kobayashi, T.Tomizawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Dnaj Homolog Subfamily A Member 3
Chain: A
Fragment: J-Domain
Synonym: Tumorous Imaginal Discs Protein Tid56 Homolog, Dnaj Protein Tid-1, Htid-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dnaja3
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050516-13
Other_details: Cell-Free Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (407 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DN9
  • Retrieve 2DN9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DN9 from S2C, [Save to disk]
  • View 2DN9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DN9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DN9, from MSDmotif at EBI
  • Fold representative 2dn9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dn9_A] [2dn9]
  • SWISS-PROT database: [Q96EY1]
  • Domain organization of [DNJA3_HUMAN] by SWISSPFAM
  • Domain found in 2DN9: [DnaJ ] by SMART
  • Other resources with information on 2DN9
  • Community annotation for 2DN9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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