2DNC Transferase date Apr 25, 2006
title Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase
authors A.Z.M.Ruhul Momen, H.Hirota, F.Hayashi, C.Kurosaki, M.Yoshida, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Pyruvate Dehydrogenase Protein X Component
Chain: A
Fragment: N-Terminal Domain Of 2-Oxoacid Dehydrogenases, Lipoyl Binding Domain;
Synonym: Dihydrolipoamide Dehydrogenase-Binding Protein Of Pyruvate Dehydrogenase Complex, Lipoyl-Containing Pyruvate Dehydrogenase Complex Component X, E3-Binding Protein, E3bp, Prox;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050613-07
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (442 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DNC
  • Original NMR restraints for 2DNC from PDB
  • Retrieve 2DNC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DNC from S2C, [Save to disk]
  • View 2DNC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DNC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DNC, from MSDmotif at EBI
  • Fold representative 2dnc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dnc] [2dnc_A]
  • SWISS-PROT database: [O00330]
  • Domain organization of [ODPX_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2DNC with the sequences similar proteins can be viewed for 2DNC's classification [ODPX_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ODPX_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2DNC
  • Community annotation for 2DNC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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