2DNE Transferase date Apr 26, 2006
title Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of Human 2-Oxoacid Dehydrogenase
authors A.Z.M.Ruhul Momen, H.Hirota, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Dihydrolipoyllysine-Residue Acetyltransferase Component Of Pyruvate Dehydrogenase Complex;
Chain: A
Fragment: N-Terminal Domain Of 2-Oxoacid Dehydrogenase, Lipoyl-Binding Domain;
Synonym: Pyruvate Dehydrogenase Complex E2 Subunit, Pdce2, E2, Dihydrolipoamide S-Acetyltransferase Component Of Pyruvate Dehydrogenase Complex, Pdc-E2, 70 Kda Mitochondrial Autoantigen Of Primary Biliary Cirrhosis, Pbc, M2 Antigen Complex 70 Kda Subunit;
Ec: 2.3.1.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050829-14
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand
enzyme Transferase E.C.2.3.1.12 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (485 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DNE
  • Original NMR restraints for 2DNE from PDB
  • Retrieve 2DNE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DNE from S2C, [Save to disk]
  • View 2DNE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DNE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DNE, from MSDmotif at EBI
  • Fold representative 2dne from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dne_A] [2dne]
  • SWISS-PROT database: [P10515]
  • Domain organization of [ODP2_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2DNE with the sequences similar proteins can be viewed for 2DNE's classification [ODP2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ODP2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2DNE
  • Community annotation for 2DNE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science