2DNE	Transferase	date	Apr 26, 2006
title	Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of Human 2-Oxoacid Dehydrogenase
authors	A.Z.M.Ruhul Momen, H.Hirota, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Dihydrolipoyllysine-Residue Acetyltransferase Component Of Pyruvate Dehydrogenase Complex; Chain: A Fragment: N-Terminal Domain Of 2-Oxoacid Dehydrogenase, Lipoyl-Binding Domain; Synonym: Pyruvate Dehydrogenase Complex E2 Subunit, Pdce2, E2, Dihydrolipoamide S-Acetyltransferase Component Of Pyruvate Dehydrogenase Complex, Pdc-E2, 70 Kda Mitochondrial Autoantigen Of Primary Biliary Cirrhosis, Pbc, M2 Antigen Complex 70 Kda Subunit; Ec: 2.3.1.12 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cell Free Synthesis Expression_system_vector_type: Plasmid Expression_system_plasmid: P050829-14 Other_details: Cell-Free Protein Synthesis
method	Solution NMR
ligand		enzyme	Transferase E.C.2.3.1.12 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (485 Kb) [Save to disk] CSU: Contacts of Structural Units for 2DNE Original NMR restraints for 2DNE from PDB Retrieve 2DNE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DNE from S2C, [Save to disk]

View 2DNE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2DNE

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2DNE, from MSDmotif at EBI Fold representative 2dne from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dne_A] SWISS-PROT database: [P10515] Domain organization of [ODP2_HUMAN] by SWISSPFAM Alignments of the sequence of 2DNE with the sequences similar proteins can be viewed for 2DNE's classification [ODP2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ODP2_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2DNE

Community annotation for 2DNE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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