2DNP Transcription date Apr 26, 2006
title Solution Structure Of Rna Binding Domain 2 In Rna-Binding Pr
authors M.Kusuhara, K.Tsuda, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirou S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Rna-Binding Protein 14
Chain: A
Fragment: Rna Recognition Motif
Synonym: Rna-Binding Motif Protein 14, Rrm-Containing Coact Activatormodulator, Synaptotagmin-Interacting Protein, Syt Interacting Protein;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbm14
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P051121-02
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (454 Kb) [Save to disk]
  • Biological Unit Coordinates (2dnp.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2DNP
  • Original NMR restraints for 2DNP from PDB
  • Retrieve 2DNP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DNP from S2C, [Save to disk]
    • View 2DNP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DNP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DNP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dnp] [2dnp_A]
  • SWISS-PROT database: [Q96PK6]
  • Domain organization of [RBM14_HUMAN] by SWISSPFAM
  • Domain found in 2DNP: [RRM ] by SMART
    • Other resources with information on 2DNP
  • Community annotation for 2DNP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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