2DNT Structural Protein date Apr 26, 2006
title Solution Structure Of Rsgi Ruh-064, A Chromo Domain From Hum
authors A.Z.M.Ruhul Momen, H.Hirota, K.Izumi, M.Yoshida, S.Yokoyama, Rike Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Chromodomain Protein, Y Chromosome-Like, Isoform
Chain: A
Fragment: Methylated Histone H3 Tail Binding Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050829-10
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (377 Kb) [Save to disk]
  • Biological Unit Coordinates (2dnt.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 2DNT
  • Original NMR restraints for 2DNT from PDB
  • Retrieve 2DNT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DNT from S2C, [Save to disk]
    • View 2DNT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DNT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DNT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dnt] [2dnt_A]
  • SWISS-PROT database: [Q9Y232]
  • Domain organization of [CDYL1_HUMAN] by SWISSPFAM
  • Domain found in 2DNT: [CHROMO ] by SMART
    • Other resources with information on 2DNT
  • Community annotation for 2DNT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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