2DO3 Transcription date Apr 27, 2006
title Solution Structure Of The Third Kow Motif Of Transcription E Factor Spt5
authors W.Tanabe, S.Suzuki, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouz S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Transcription Elongation Factor Spt5
Chain: A
Fragment: Kow Motif
Synonym: Hspt5, Drb Sensitivity-Inducing Factor Large Subun Large Subunit, Dsif P160, Tat- Cotransactivator 1 Protein, Protein;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Supt5h
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060130-01
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (363 Kb) [Save to disk]
  • Biological Unit Coordinates (2do3.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 2DO3
  • Original NMR restraints for 2DO3 from PDB
  • Retrieve 2DO3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DO3 from S2C, [Save to disk]
    • View 2DO3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DO3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DO3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2do3] [2do3_A]
  • SWISS-PROT database: [O00267]
  • Domain organization of [SPT5H_HUMAN] by SWISSPFAM
  • Domain found in 2DO3: [KOW ] by SMART
    • Other resources with information on 2DO3
  • Community annotation for 2DO3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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