2DO4 Immune System date Apr 27, 2006
title Solution Structure Of The Rna Binding Domain Of Squamous Cell Carcinoma Antigen Recognized By T Cells 3
authors W.Tanabe, S.Suzuki, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Squamous Cell Carcinoma Antigen Recognized By T- Cells 3;
Chain: A
Fragment: Rna Recognition Motif
Synonym: Sart-3, Hsart-3, Tat-Interacting Protein Of 110 Kda, Tip110;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sart3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P051121-11
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (508 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DO4
  • Original NMR restraints for 2DO4 from PDB
  • Retrieve 2DO4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DO4 from S2C, [Save to disk]
  • View 2DO4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DO4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DO4, from MSDmotif at EBI
  • Fold representative 2do4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2do4] [2do4_A]
  • SWISS-PROT database: [Q15020]
  • Domain organization of [SART3_HUMAN] by SWISSPFAM
  • Domain found in 2DO4: [RRM ] by SMART
  • Other resources with information on 2DO4
  • Community annotation for 2DO4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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