2DOF Transcription date Apr 28, 2006
title Solution Structure Of The Fourth Ff Domain Of Human Transcri Factor Ca150
authors S.Suzuki, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoy Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Transcription Elongation Regulator 1
Chain: A
Fragment: Ff Domain
Synonym: Tata Box-Binding Protein-Associated Factor 2s, Tra Factor Ca150;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tcerg1, Ca150, Taf2s
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P051128-10
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (457 Kb) [Save to disk]
  • Biological Unit Coordinates (2dof.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 2DOF
  • Original NMR restraints for 2DOF from PDB
  • Retrieve 2DOF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DOF from S2C, [Save to disk]
    • View 2DOF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DOF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DOF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dof] [2dof_A]
  • SWISS-PROT database: [O14776]
  • Domain organization of [TCRG1_HUMAN] by SWISSPFAM
  • Domain found in 2DOF: [FF ] by SMART
    • Other resources with information on 2DOF
  • Community annotation for 2DOF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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