2DOU Transferase date May 03, 2006
title Probable N-Succinyldiaminopimelate Aminotransferase (Ttha034 Thermus Thermophilus Hb8
authors R.Omi, M.Goto, I.Miyahara, K.Hirotsu, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Probable N-Succinyldiaminopimelate Aminotransfera
Chain: A, B
Ec: 2.-.-.-
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.222 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.490 121.490 172.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand EPE, SO4 enzyme Transferase E.C.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (2dou.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 2DOU
  • CSU: Contacts of Structural Units for 2DOU
  • Likely Quarternary Molecular Structure file(s) for 2DOU
  • Structure Factors (479 Kb)
  • Retrieve 2DOU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DOU from S2C, [Save to disk]
  • Re-refined 2dou structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2DOU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DOU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DOU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dou_A] [2dou_B] [2dou]
  • SWISS-PROT database: [Q5SLF1]
  • Domain organization of [Q5SLF1_THET8] by SWISSPFAM
    • Other resources with information on 2DOU
  • Community annotation for 2DOU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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