2DPB		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CMY, K	enzyme
Primary reference	Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules., Juan EC, Kondo J, Kurihara T, Ito T, Ueno Y, Matsuda A, Takenaka A, Nucleic Acids Res. 2007 Mar 6;. PMID:17341465

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk] Biological Unit Coordinates (2dpb.pdb1.gz) 15 Kb LPC: Ligand-Protein Contacts for 2DPB CSU: Contacts of Structural Units for 2DPB Likely Quarternary Molecular Structure file(s) for 2DPB Structure Factors (294 Kb) Retrieve 2DPB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DPB from S2C, [Save to disk] Re-refined 2dpb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DPB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dpb] [2dpb_A] [2dpb_B] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---