2DQ5 Ligase date May 20, 2006
title Solution Structure Of The Mid1 B Box2 Chc(Dc)C2h2 Zinc-Bind Domain: Insights Into An Evolutionary Conserved Ring Fold
authors M.A.Massiah, J.A.B.Matts, K.M.Short, B.N.Simmons, S.Singireddy, J T.C.Cox
compound source
Molecule: Midline-1
Chain: A
Fragment: Bbox2 Domain
Synonym: Tripartite Motif Protein 18, Putative Transcriptio Xprf, Midin, Ring Finger Protein 59, Midline 1 Ring Finger
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mid1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t2
methodSolution NMR
ligand ZN enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution Structure of the MID1 B-box2 CHC(D/C)C(2)H(2) Zinc-binding Domain: Insights into an Evolutionarily Conserved RING Fold., Massiah MA, Matts JA, Short KM, Simmons BN, Singireddy S, Yi Z, Cox TC, J Mol Biol. 2007 May 25;369(1):1-10. Epub 2007 Mar 15. PMID:17428496
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (2dq5.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 2DQ5
  • CSU: Contacts of Structural Units for 2DQ5
  • Original NMR restraints for 2DQ5 from PDB
  • Retrieve 2DQ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DQ5 from S2C, [Save to disk]
  • View 2DQ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DQ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DQ5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dq5_A] [2dq5]
  • SWISS-PROT database: [O15344]
  • Domain organization of [TRI18_HUMAN] by SWISSPFAM
  • Domain found in 2DQ5: [BBOX ] by SMART
  • Other resources with information on 2DQ5
  • Community annotation for 2DQ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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