2DRP	Transcription Dna	date	Jun 06, 1994
title	The Crystal Structure Of A Two Zinc-Finger Peptide Reveals A Extension To The Rules For Zinc-Fingerdna Recognition
authors	L.Fairall, J.W.R.Schwabe, L.Chapman, J.T.Finch, D.Rhodes
compound		source
Molecule: Dna (5'- D(Cptpapaptpapapgpgpaptpapapcpgptpc Pcpg Chain: B, E Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'- D(Tpcpgpgpapcpgptptpaptpcpcptptpapt Ptpa Chain: C, F Engineered: Yes		Synthetic: Yes
Molecule: Protein (Tramtrack Dna-Binding Domain) Chain: A, D Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.700 64.600 117.600 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	ZN	enzyme
note	2DRP is a representative structure
Primary reference	The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition., Fairall L, Schwabe JW, Chapman L, Finch JT, Rhodes D, Nature 1993 Dec 2;366(6454):483-7. PMID:8247159

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (2drp.pdb1.gz) 28 Kb Biological Unit Coordinates (2drp.pdb2.gz) 28 Kb LPC: Ligand-Protein Contacts for 2DRP CSU: Contacts of Structural Units for 2DRP Likely Quarternary Molecular Structure file(s) for 2DRP Retrieve 2DRP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DRP from S2C, [Save to disk]

View 2DRP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DRP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DRP, from MSDmotif at EBI Genome occurence of 2DRP's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d2drpa1, region A:103-139 [Jmol] [rasmolscript] [script source]     - Domain d2drpa2, region A:140-165 [Jmol] [rasmolscript] [script source]     - Domain d2drpd1, region D:102-139 [Jmol] [rasmolscript] [script source]     - Domain d2drpd2, region D:140-166 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2drp_C] [2drp_E] [2drp_B] [2drp_F] [2drp_A] [2drp_D] [2drp] SWISS-PROT database: [P17789] Domain organization of [TTKB_DROME] by SWISSPFAM Domain found in 2DRP: [ZnF_C2H2 ] by SMART

Other resources with information on 2DRP

Community annotation for 2DRP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---