2DT6 Rna Binding Protein date Jul 11, 2006
title Solution Structure Of The First Surp Domain Of Human Splicing Factor Sf3a120
authors K.Kuwasako, F.He, M.Inoue, A.Tanaka, S.Sugano, P.Guentert, Y.Muto, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Splicing Factor 3 Subunit 1
Chain: A
Fragment: Surp Domain
Synonym: Spliceosome-Associated Protein 114, Sap 114, Sf3a120;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sf3a120, Sf3a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b-Sf3a120 Surp1
methodSolution NMR
note 2DT6 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structures of the SURP domains and the subunit-assembly mechanism within the splicing factor SF3a complex in 17S U2 snRNP., Kuwasako K, He F, Inoue M, Tanaka A, Sugano S, Guntert P, Muto Y, Yokoyama S, Structure. 2006 Nov;14(11):1677-89. PMID:17098193
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (343 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DT6
  • Original NMR restraints for 2DT6 from PDB
  • Retrieve 2DT6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DT6 from S2C, [Save to disk]
  • View 2DT6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DT6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DT6, from MSDmotif at EBI
  • Fold representative 2dt6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dt6_A] [2dt6]
  • SWISS-PROT database: [Q15459]
  • Domain organization of [SF3A1_HUMAN] by SWISSPFAM
  • Domain found in 2DT6: [SWAP ] by SMART
  • Other resources with information on 2DT6
  • Community annotation for 2DT6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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