2DWV Protein Binding date Aug 17, 2006
title Solution Structure Of The Second Ww Domain From Mouse Salvad Protein (Mww45)
authors S.Ohnishi, T.Kigawa, S.Koshiba, T.Tomizawa, M.Sato, N.Tochio, M.In T.Harada, S.Watanabe, P.Guntert, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Salvador Homolog 1 Protein
Chain: A, B
Fragment: The Second Ww Domain
Synonym: 45 Kda Ww Domain Protein, Mww45
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Sav1, Ww45, Wwp3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P051121-01
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSolution structure of an atypical WW domain in a novel beta-clam-like dimeric form., Ohnishi S, Guntert P, Koshiba S, Tomizawa T, Akasaka R, Tochio N, Sato M, Inoue M, Harada T, Watanabe S, Tanaka A, Shirouzu M, Kigawa T, Yokoyama S, FEBS Lett. 2007 Feb 6;581(3):462-8. Epub 2007 Jan 16. PMID:17239860
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (476 Kb) [Save to disk]
  • Biological Unit Coordinates (2dwv.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 2DWV
  • Retrieve 2DWV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DWV from S2C, [Save to disk]
    • View 2DWV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DWV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DWV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dwv] [2dwv_A] [2dwv_B]
  • SWISS-PROT database: [Q8VEB2]
  • Domain organization of [SAV1_MOUSE] by SWISSPFAM
  • Domain found in 2DWV: [WW ] by SMART
    • Other resources with information on 2DWV
  • Community annotation for 2DWV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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