2DWY Protein Transport date Aug 21, 2006
title Crystal Structure Analysis Of Gga1-Gae
authors M.Inoue, T.Shiba, Y.Yamada, K.Ihara, M.Kawasaki, R.Kato, K.Nakayam S.Wakatsuki
compound source
Molecule: Adp-Ribosylation Factor Binding Protein Gga1
Chain: A, B, C, D
Fragment: Gae Domain, Residues 507-639
Synonym: Golgi-Localized, Gamma Ear-Containing, Arf-Binding 1, Gamma-Adaptin Related Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-2
symmetry Space Group: P 1 21 1
R_factor 0.217 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.482 88.238 67.224 90.00 96.10 90.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceMolecular Basis for Autoregulatory Interaction Between GAE Domain and Hinge Region of GGA1., Inoue M, Shiba T, Ihara K, Yamada Y, Hirano S, Kamikubo H, Kataoka M, Kawasaki M, Kato R, Nakayama K, Wakatsuki S, Traffic. 2007 Jul 20;8(7):904-913. Epub 2007 May 16. PMID:17506864
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (2dwy.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (2dwy.pdb2.gz) 21 Kb
  • Biological Unit Coordinates (2dwy.pdb3.gz) 23 Kb
  • Biological Unit Coordinates (2dwy.pdb4.gz) 22 Kb
  • Biological Unit Coordinates (2dwy.pdb5.gz) 43 Kb
  • Biological Unit Coordinates (2dwy.pdb6.gz) 42 Kb
  • CSU: Contacts of Structural Units for 2DWY
  • Likely Quarternary Molecular Structure file(s) for 2DWY
  • Structure Factors (186 Kb)
  • Retrieve 2DWY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DWY from S2C, [Save to disk]
  • Re-refined 2dwy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2DWY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DWY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DWY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dwy_D] [2dwy_A] [2dwy] [2dwy_B] [2dwy_C]
  • SWISS-PROT database: [Q9UJY5]
  • Domain organization of [GGA1_HUMAN] by SWISSPFAM
  • Domain found in 2DWY: [Alpha_adaptinC2 ] by SMART
  • Other resources with information on 2DWY
  • Community annotation for 2DWY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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