OCA Atlas for 2DXB

2DXB

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

3CO, CSD, CSO, PO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
R, I, O, C, U, X, L, F
S, K, T, W, N, M, G, D, P, A, H, B, J, Q, V, E

Primary reference

Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification., Arakawa T, Kawano Y, Katayama Y, Nakayama H, Dohmae N, Yohda M, Odaka M, J Am Chem Soc. 2009 Sep 28. PMID:19785438

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (675 Kb) [Save to disk]

Biological Unit Coordinates (2dxb.pdb1.gz) 337 Kb

Biological Unit Coordinates (2dxb.pdb2.gz) 338 Kb

LPC: Ligand-Protein Contacts for 2DXB

CSU: Contacts of Structural Units for 2DXB

Likely Quarternary Molecular Structure file(s) for 2DXB

Structure Factors (2705 Kb)

Retrieve 2DXB in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2DXB from S2C, [Save to disk]

Re-refined 2dxb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DXB in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dxb] [2dxb_A] [2dxb_B] [2dxb_C] [2dxb_D] [2dxb_E] [2dxb_F] [2dxb_G] [2dxb_H] [2dxb_I] [2dxb_J] [2dxb_K] [2dxb_L] [2dxb_M] [2dxb_N] [2dxb_O] [2dxb_P] [2dxb_Q] [2dxb_R] [2dxb_S] [2dxb_T] [2dxb_U] [2dxb_V] [2dxb_W] [2dxb_X]

SWISS-PROT database: [O66187] [O66186] [O66188]

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