2DY5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 224, CL, HEM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray crystallographic and biochemical characterization of the inhibitory action of an imidazole-dioxolane compound on heme oxygenase., Sugishima M, Higashimoto Y, Oishi T, Takahashi H, Sakamoto H, Noguchi M, Fukuyama K, Biochemistry. 2007 Feb 20;46(7):1860-7. Epub 2007 Jan 25. PMID:17253780
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2dy5.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2DY5
  • CSU: Contacts of Structural Units for 2DY5
  • Likely Quarternary Molecular Structure file(s) for 2DY5
  • Structure Factors (130 Kb)
  • Retrieve 2DY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DY5 from S2C, [Save to disk]
  • Re-refined 2dy5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2DY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dy5] [2dy5_A]
  • SWISS-PROT database: [P06762]

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