2DYS		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CDL, CHD, CU, CUA, DCW, DMU, FME, HEA, MG, NA, PEK, PGV, PSC, SAC, TGL, TPO, UNX, ZN	enzyme
Gene Ontology	Chain Function Process Component A, N B, O cytochrome-c oxidase activit... D, Q E, R F, S G, T H, U I, V cytochrome-c oxidase activit... J, W K, X P, C cytochrome-c oxidase activit... oxidoreduction-driven active... Y, L Z, M
Primary reference	Structures and physiological roles of 13 integral lipids of bovine heart cytochrome c oxidase., Shinzawa-Itoh K, Aoyama H, Muramoto K, Terada H, Kurauchi T, Tadehara Y, Yamasaki A, Sugimura T, Kurono S, Tsujimoto K, Mizushima T, Yamashita E, Tsukihara T, Yoshikawa S, EMBO J. 2007 Mar 21;26(6):1713-25. Epub 2007 Mar 1. PMID:17332748

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (666 Kb) [Save to disk] Biological Unit Coordinates (2dys.pdb1.gz) 643 Kb LPC: Ligand-Protein Contacts for 2DYS CSU: Contacts of Structural Units for 2DYS Likely Quarternary Molecular Structure file(s) for 2DYS Structure Factors (3182 Kb) Retrieve 2DYS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DYS from S2C, [Save to disk] Re-refined 2dys structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DYS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dys] [2dys_A] [2dys_B] [2dys_C] [2dys_D] [2dys_E] [2dys_F] [2dys_G] [2dys_H] [2dys_I] [2dys_J] [2dys_K] [2dys_L] [2dys_M] [2dys_N] [2dys_O] [2dys_P] [2dys_Q] [2dys_R] [2dys_S] [2dys_T] [2dys_U] [2dys_V] [2dys_W] [2dys_X] [2dys_Y] [2dys_Z] SWISS-PROT database: [P00396] [P68530] [P00415] [P00423] [P00426] [P00428] [P04038] [P13183] [P00430] [P10175] [P07471] [P00429] [P07470] Belongs to the proton-translocating cytochrome oxidase (cox) superfamily according to TCDB.

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