2E0T Hydrolase date Oct 13, 2006
title Crystal Structure Of Catalytic Domain Of Dual Specificity Ph 26, Ms0830 From Homo Sapiens
authors Y.Xie, S.Kishishita, K.Murayama, C.Hori-Takemoto, L.Chen, Z.J.Liu B.C.Wang, M.Shirozu, S.Yokoyama, Riken Structural Genomicspro Initiative (Rsgi)
compound source
Molecule: Dual Specificity Phosphatase 26
Chain: A
Fragment: Catalytic Domain, Residues 61-211
Synonym: Ms0830, Putative, Low-Molecular-Mass Dual- Specifi Phosphatase 4, Dual-Specificity Phosphatase Skrp3, Mitogen- Protein Kinase Phosphatase 8, Nata1 Protein, Cdna Flj31142 Imr322001317, Weakly Similar To Homo Sapiens Protein Phosph
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pk060110-18-Md01
Other_details: Cell-Free Protein Synthesis
symmetry Space Group: C 1 2 1
R_factor 0.172 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.721 40.176 49.944 90.00 110.35 90.00
method X-Ray Diffractionresolution 1.67 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-resolution crystal structure of the catalytic domain of human dual-specificity phosphatase 26., Won EY, Xie Y, Takemoto C, Chen L, Liu ZJ, Wang BC, Lee D, Woo EJ, Park SG, Shirouzu M, Yokoyama S, Kim SJ, Chi SW, Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):1160-70. doi:, 10.1107/S0907444913004770. Epub 2013 May 16. PMID:23695260
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (2e0t.pdb1.gz) 59 Kb
  • CSU: Contacts of Structural Units for 2E0T
  • Likely Quarternary Molecular Structure file(s) for 2E0T
  • Structure Factors (118 Kb)
  • Retrieve 2E0T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E0T from S2C, [Save to disk]
  • Re-refined 2e0t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E0T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E0T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2E0T, from MSDmotif at EBI
  • Fold representative 2e0t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e0t_A] [2e0t]
  • SWISS-PROT database: [Q9BV47]
  • Domain organization of [DUS26_HUMAN] by SWISSPFAM
  • Domain found in 2E0T: [DSPc ] by SMART
  • Other resources with information on 2E0T
  • Community annotation for 2E0T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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