2E29 Hydrolase date Nov 10, 2006
title Solution Structure Of The Guct Domain From Human Atp- Dependent Rna Helicase Ddx50, Dead Box Protein 50
authors S.Ohnishi, K.Paakkonen, P.Guntert, M.Sato, S.Koshiba, T.Harada, S.Watanabe, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Atp-Dependent Rna Helicase Ddx50
Chain: A
Fragment: Guct Domain, Residues 8-92
Synonym: Dead Box Protein 50, Nucleolar Protein Gu2, Gu- Beta;
Ec: 3.6.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ddx50
Expression_system: Cell-Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060403-01
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.6.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the GUCT domain from human RNA helicase II/Gubeta reveals the RRM fold, but implausible RNA interactions., Ohnishi S, Paakkonen K, Koshiba S, Tochio N, Sato M, Kobayashi N, Harada T, Watanabe S, Muto Y, Guntert P, Tanaka A, Kigawa T, Yokoyama S, Proteins. 2008 Jul 9;74(1):133-144. PMID:18615715
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (469 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2E29
  • Retrieve 2E29 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E29 from S2C, [Save to disk]
  • View 2E29 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E29
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2E29, from MSDmotif at EBI
  • Fold representative 2e29 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e29] [2e29_] [2e29_A]
  • SWISS-PROT database: [Q9BQ39]
  • Domain organization of [DDX50_HUMAN] by SWISSPFAM
  • Other resources with information on 2E29
  • Community annotation for 2E29 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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