2E3I Structural Protein date Nov 26, 2006
title Crystal Structure Of The Clip-170 Cap-Gly Domain 1
authors R.Maesaki, T.Hakoshima
compound source
Molecule: Restin
Chain: A
Fragment: Cap-Gly Domain 1
Synonym: Clip-170, Cytoplasmic Linker Protein 170 Alpha-2, Reed- Sternberg Intermediate Filament-Associated Protein, Cytoplasmic Linker Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Clip-170
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p
symmetry Space Group: P 21 21 2
R_factor 0.235 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.298 27.117 30.508 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceStructural basis for tubulin recognition by cytoplasmic linker protein 170 and its autoinhibition., Mishima M, Maesaki R, Kasa M, Watanabe T, Fukata M, Kaibuchi K, Hakoshima T, Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10346-51. Epub 2007 Jun 11. PMID:17563362
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (2e3i.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 2E3I
  • Likely Quarternary Molecular Structure file(s) for 2E3I
  • Structure Factors (38 Kb)
  • Retrieve 2E3I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E3I from S2C, [Save to disk]
  • Re-refined 2e3i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E3I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E3I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2E3I, from MSDmotif at EBI
  • Fold representative 2e3i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e3i_A] [2e3i]
  • SWISS-PROT database: [P30622]
  • Domain organization of [CLIP1_HUMAN] by SWISSPFAM
  • Domain found in 2E3I: [CAP_GLY ] by SMART
  • Other resources with information on 2E3I
  • Community annotation for 2E3I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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