2E67 Structural Genomics, Unknown Function date Dec 26, 2006
title Crystal Structure Of The Hypothetical Protein Tthb029 From T Thermophilus Hb8
authors T.Imagawa, Riken Structural Genomicsproteomics Initiative (R
compound source
Molecule: Hypothetical Protein Tthb029
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: H 3 2
R_factor 0.219 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
202.006 202.006 345.294 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structure of the YdjC-family protein TTHB029 from Thermus thermophilus HB8: structural relationship with peptidoglycan N-acetylglucosamine deacetylase., Imagawa T, Iino H, Kanagawa M, Ebihara A, Kuramitsu S, Tsuge H, Biochem Biophys Res Commun. 2008 Mar 14;367(3):535-41. Epub 2008 Jan 3. PMID:18177738
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (261 Kb) [Save to disk]
  • Biological Unit Coordinates (2e67.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (2e67.pdb2.gz) 88 Kb
  • Biological Unit Coordinates (2e67.pdb3.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 2E67
  • CSU: Contacts of Structural Units for 2E67
  • Likely Quarternary Molecular Structure file(s) for 2E67
  • Structure Factors (397 Kb)
  • Retrieve 2E67 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E67 from S2C, [Save to disk]
  • Re-refined 2e67 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2E67 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2E67
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E67, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e67_E] [2e67_C] [2e67_B] [2e67_A] [2e67_D] [2e67_F] [2e67]
  • SWISS-PROT database: [Q53WD3]
  • Domain organization of [Q53WD3_THET8] by SWISSPFAM
    • Other resources with information on 2E67
  • Community annotation for 2E67 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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