2E70 Transcription date Jan 05, 2007
title Solution Structure Of The Fifth Kow Motif Of Human Transcrip Elongation Factor Spt5
authors W.Tanabe, S.Suzuki, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouz S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Transcription Elongation Factor Spt5
Chain: A
Fragment: Kow Motif
Synonym: Hspt5, Drb Sensitivity-Inducing Factor Large Subun Large Subunit, Dsif P160, Tat-Cotransactivator 1 Protein, T Protein;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Supt5h, Spt5, Spt5h
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060130-02
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
note 2E70 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (360 Kb) [Save to disk]
  • Biological Unit Coordinates (2e70.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 2E70
  • Original NMR restraints for 2E70 from PDB
  • Retrieve 2E70 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E70 from S2C, [Save to disk]
    • View 2E70 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2E70
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E70, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e70_A] [2e70]
  • SWISS-PROT database: [O00267]
  • Domain organization of [SPT5H_HUMAN] by SWISSPFAM
  • Domain found in 2E70: [KOW ] by SMART
    • Other resources with information on 2E70
  • Community annotation for 2E70 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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