2E7H Transferase, Signaling Protein date Jan 10, 2007
title Solution Structure Of The Second Fn3 Domain From Human Ephrin Type-B Receptor 4
authors X.R.Qin, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Ephrin Type-B Receptor 4
Chain: A
Fragment: Fn3 Domain
Synonym: Tyrosine-Protein Kinase Receptor Htk
Ec: 2.7.10.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ephb4, Htk
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050919-21
Other_details: Cell Free Protein Synthesis
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (533 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2E7H
  • Original NMR restraints for 2E7H from PDB
  • Retrieve 2E7H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E7H from S2C, [Save to disk]
    • View 2E7H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2E7H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2E7H, from MSDmotif at EBI
  • Fold representative 2e7h from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e7h_A]
  • SWISS-PROT database: [P54760]
  • Domain organization of [EPHB4_HUMAN] by SWISSPFAM
  • Domain found in 2E7H: [FN3 ] by SMART
  • Alignments of the sequence of 2E7H with the sequences similar proteins can be viewed for 2E7H's classification [EPHB4_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [EPHB4_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2E7H
  • Community annotation for 2E7H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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