2E8O Signaling Protein date Jan 22, 2007
title Solution Structure Of The N-Terminal Sam-Domain Of The Sam D Hd Domain Containing Protein 1 (Dendritic Cell-Derived Ifng Protein) (Dcip) (Monocyte Protein 5) (Mop-5)
authors A.K.Goroncy, N.Tochio, S.Koshiba, S.Watanabe, T.Harada, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Sam Domain And Hd Domain-Containing Protein 1
Chain: A
Fragment: Sam Domain
Synonym: Dendritic Cell-Derived Ifng-Induced Protein, Dcip, Protein 5, Mop-5;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Samhd1, Mop5
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060123-30
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (537 Kb) [Save to disk]
  • Biological Unit Coordinates (2e8o.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2E8O
  • Original NMR restraints for 2E8O from PDB
  • Retrieve 2E8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E8O from S2C, [Save to disk]
  • View 2E8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E8O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E8O, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e8o_A] [2e8o]
  • SWISS-PROT database: [Q9Y3Z3]
  • Domain organization of [SAMH1_HUMAN] by SWISSPFAM
  • Domain found in 2E8O: [SAM ] by SMART
  • Other resources with information on 2E8O
  • Community annotation for 2E8O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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