2E9X Replication date Jan 27, 2007
title The Crystal Structure Of Human Gins Core Complex
authors K.Kamada, F.Hanaoka
compound source
Molecule: Dna Replication Complex Gins Protein Psf1
Chain: A, E
Fragment: C-Terminal Truncation, Residues 1-149
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela Cells
Gene: Psf1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid

Molecule: Dna Replication Complex Gins Protein Psf2
Chain: B, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela Cells
Gene: Psf2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid

Molecule: Gins Complex Subunit 3
Chain: C, G
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela Cells
Gene: Psf3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid

Molecule: Gins Complex Subunit 4
Chain: D, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela Cells
Gene: Sld5
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1
R_factor 0.197 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.928 88.741 102.129 104.69 102.96 95.47
method X-Ray Diffractionresolution 2.30 Å
ligand SO4 enzyme
note 2E9X is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B
  • 3'-5' DNA helicase activity


  • H, D
  • 3'-5' DNA helicase activity


  • Primary referenceStructure of the human GINS complex and its assembly and functional interface in replication initiation., Kamada K, Kubota Y, Arata T, Shindo Y, Hanaoka F, Nat Struct Mol Biol. 2007 May;14(5):388-96. Epub 2007 Apr 8. PMID:17417653
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (2e9x.pdb1.gz) 122 Kb
  • Biological Unit Coordinates (2e9x.pdb2.gz) 123 Kb
  • Biological Unit Coordinates (2e9x.pdb3.gz) 241 Kb
  • Biological Unit Coordinates (2e9x.pdb4.gz) 241 Kb
  • LPC: Ligand-Protein Contacts for 2E9X
  • CSU: Contacts of Structural Units for 2E9X
  • Likely Quarternary Molecular Structure file(s) for 2E9X
  • Structure Factors (5125 Kb)
  • Retrieve 2E9X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E9X from S2C, [Save to disk]
  • Re-refined 2e9x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E9X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E9X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2E9X, from MSDmotif at EBI
  • Fold representative 2e9x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e9x_E] [2e9x_D] [2e9x_A] [2e9x_B] [2e9x_C] [2e9x_F] [2e9x_H] [2e9x_G] [2e9x]
  • SWISS-PROT database: [Q14691] [Q9Y248] [Q9BRX5] [Q9BRT9]
  • Domain organization of [PSF1_HUMAN] [PSF2_HUMAN] [PSF3_HUMAN] [SLD5_HUMAN] by SWISSPFAM
  • Other resources with information on 2E9X
  • Community annotation for 2E9X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science