2EAW Lyase date Feb 03, 2007
title Human Ump Synthase (C-Terminal Domain- Orotidine 5'-Monophos Decarboxylase)
authors Y.Liu, H.L.Tang, E.F.Pai
compound source
Molecule: Uridine 5'-Monophosphate Synthase
Chain: A, B
Fragment: Orotidine 5'-Monophosphate Decarboxylase Domain, 1-291 (190-480);
Synonym: Ump Synthase, Orotidine 5'-Phosphate Decarboxylase
Ec: 4.1.1.23, 2.4.2.10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Umps
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.259 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.571 59.370 69.863 90.00 114.30 90.00
method X-Ray Diffractionresolution 2.88 Å
ligand SO4 enzyme Lyase E.C.4.1.1.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (2eaw.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 2EAW
  • CSU: Contacts of Structural Units for 2EAW
  • Likely Quarternary Molecular Structure file(s) for 2EAW
  • Structure Factors (89 Kb)
  • Retrieve 2EAW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EAW from S2C, [Save to disk]
  • Re-refined 2eaw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2EAW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EAW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EAW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2eaw_B] [2eaw] [2eaw_A]
  • SWISS-PROT database: [P11172]
  • Domain organization of [PYR5_HUMAN] by SWISSPFAM
  • Domain found in 2EAW: [OMPdecase ] by SMART
  • Other resources with information on 2EAW
  • Community annotation for 2EAW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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