2EAY Ligase date Feb 04, 2007
title Crystal Structure Of Biotin Protein Ligase From Aquifex Aeol
authors B.Bagautdinov, N.Kunishima, Riken Structural Genomicsproteomi Initiative (Rsgi)
compound source
Molecule: Biotin [Acetyl-Coa-Carboxylase] Ligase
Chain: A, B
Synonym: Biotin Protein Ligase
Ec: 6.3.4.15
Engineered: Yes
Organism_scientific: Aquifex Aeolicus
Organism_taxid: 63363
Gene: Bira
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: (De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 11a
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.076 60.589 73.106 90.00 91.99 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand MSE enzyme Ligase E.C.6.3.4.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (2eay.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 2EAY
  • CSU: Contacts of Structural Units for 2EAY
  • Likely Quarternary Molecular Structure file(s) for 2EAY
  • Structure Factors (262 Kb)
  • Retrieve 2EAY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EAY from S2C, [Save to disk]
  • Re-refined 2eay structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2EAY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EAY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EAY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2eay_A] [2eay_B] [2eay]
  • SWISS-PROT database: [O66837]
  • Domain organization of [O66837_AQUAE] by SWISSPFAM
  • Other resources with information on 2EAY
  • Community annotation for 2EAY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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