2EB3	Transferase	date	Feb 06, 2007
title	Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In C With Amppnp
authors	S.Yoshikawa, M.Kukimoto-Niino, M.Shirouzu, K.Senba, T.Yamamoto, S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound		source
Molecule: Epidermal Growth Factor Receptor Chain: A Fragment: Kinase Domain, Unp Residues 695-1022 Synonym: Receptor Tyrosine-Protein Kinase Erbb-1 Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Egfr Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Baculovirus Expression_system_vector: Pfastbac_ht_c
symmetry	Space Group: I 2 3	R_factor 0.190 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 144.686 144.686 144.686 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.84 Å
ligand	ANP	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for the altered drug sensitivities of non-small cell lung cancer-associated mutants of human epidermal growth factor receptor., Yoshikawa S, Kukimoto-Niino M, Parker L, Handa N, Terada T, Fujimoto T, Terazawa Y, Wakiyama M, Sato M, Sano S, Kobayashi T, Tanaka T, Chen L, Liu ZJ, Wang BC, Shirouzu M, Kawa S, Semba K, Yamamoto T, Yokoyama S, Oncogene. 2012 Feb 20. doi: 10.1038/onc.2012.21. PMID:22349823

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (2eb3.pdb1.gz) 97 Kb LPC: Ligand-Protein Contacts for 2EB3 CSU: Contacts of Structural Units for 2EB3 Likely Quarternary Molecular Structure file(s) for 2EB3 Structure Factors (123 Kb) Retrieve 2EB3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2EB3 from S2C, [Save to disk] Re-refined 2eb3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2EB3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2EB3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2EB3, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d2eb3, region B:55-250 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2eb3] [2eb3_A] SWISS-PROT database: [P00533] Domain organization of [EGFR_HUMAN] by SWISSPFAM Domain found in 2EB3: [TyrKc ] by SMART

Other resources with information on 2EB3

Community annotation for 2EB3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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