2EBQ Transport Protein date Feb 09, 2007
title Solution Structure Of The Second Zf-Ranbp Domain From Human Pore Complex Protein Nup153
authors H.P.Zhang, C.Kurosaki, M.Yoshida, F.Hayashi, S.Yokoyama, Riken St Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Nuclear Pore Complex Protein Nup153
Chain: A
Fragment: Zf-Ranbp Domain
Synonym: Nucleoporin Nup153, 153 Kda Nucleoporin
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nup153
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060116-18
Other_details: Cell Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (225 Kb) [Save to disk]
  • Biological Unit Coordinates (2ebq.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 2EBQ
  • CSU: Contacts of Structural Units for 2EBQ
  • Retrieve 2EBQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EBQ from S2C, [Save to disk]
    • View 2EBQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2EBQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EBQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ebq_A] [2ebq]
  • SWISS-PROT database: [P49790]
  • Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB.
  • Domain organization of [NU153_HUMAN] by SWISSPFAM
  • Domain found in 2EBQ: [ZnF_RBZ ] by SMART
    • Other resources with information on 2EBQ
  • Community annotation for 2EBQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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