2EC1 Transport Protein date Feb 09, 2007
title Solution Structure Of The Ranbd1 Domain From Human Nucleopor
authors H.P.Zhang, C.Kurosaki, M.Yoshida, F.Hayashi, S.Yokoyama, Riken St Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Nucleoporin 50 Kda
Chain: A
Fragment: Ranbp Domain
Synonym: Nuclear Pore-Associated Protein 60 Kda-Like
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nup50, Npap60l, Pro1146
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060320-24
Other_details: Cell Free Protein Synthesis
methodSolution NMR
note 2EC1 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (640 Kb) [Save to disk]
  • Biological Unit Coordinates (2ec1.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 2EC1
  • Retrieve 2EC1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EC1 from S2C, [Save to disk]
    • View 2EC1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2EC1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EC1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d2ec1, region C:251-348 [Jmol] [rasmolscript] [script source]
        - Domain d1f2ec1, region C:81-201 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ec1] [2ec1_A]
  • SWISS-PROT database: [Q9UKX7]
  • Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB.
  • Domain organization of [NUP50_HUMAN] by SWISSPFAM
  • Domain found in 2EC1: [RanBD ] by SMART
    • Other resources with information on 2EC1
  • Community annotation for 2EC1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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