2ECC Dna Binding Protein date Feb 13, 2007
title Solution Structure Of The Second Homeobox Domain Of Human Ho Leucine Zipper-Encoding Gene (Homez)
authors S.Ohnishi, Y.O.Kamatari, N.Tochio, N.Nameki, K.Miyamoto, H.Li, N.K S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Homeobox And Leucine Zipper Protein Homez
Chain: A
Fragment: Homeobox Domain
Synonym: Homeodomain Leucine Zipper- Containing Factor
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Homez, Kiaa1443
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040126-87
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
note 2ECC supersedes 1WJH
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (412 Kb) [Save to disk]
  • Biological Unit Coordinates (2ecc.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 2ECC
  • Retrieve 2ECC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ECC from S2C, [Save to disk]
    • View 2ECC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ECC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ECC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ecc] [2ecc_A]
  • SWISS-PROT database: [Q8IX15]
  • Domain organization of [HOMEZ_HUMAN] by SWISSPFAM
  • Domain found in 2ECC: [HOX ] by SMART
    • Other resources with information on 2ECC
  • Community annotation for 2ECC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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