2ECL Metal Binding Protein date Feb 13, 2007
title Solution Structure Of The Ring Domain Of The Human Ring-Box
authors K.Miyamoto, T.Tomizawa, S.Koshiba, S.Watanabe, T.Harada, T.Kigawa S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Ring-Box Protein 2
Chain: A
Fragment: Ring Domain
Synonym: Rbx2, Ring Finger Protein 7, Regulator Of Cullins Beta-Binding Protein 1, Ckbbp1, Sensitive To Apoptosis Gene
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rnf7
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060828-18
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (412 Kb) [Save to disk]
  • Biological Unit Coordinates (2ecl.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2ECL
  • CSU: Contacts of Structural Units for 2ECL
  • Retrieve 2ECL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ECL from S2C, [Save to disk]
    • View 2ECL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ECL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ECL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ecl_A] [2ecl]
  • SWISS-PROT database: [Q9UBF6]
  • Domain organization of [RBX2_HUMAN] by SWISSPFAM
  • Domain found in 2ECL: [RING ] by SMART
    • Other resources with information on 2ECL
  • Community annotation for 2ECL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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