2ECV Ligase date Feb 14, 2007
title Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Fing Of Tripartite Motif-Containing Protein 5
authors H.Abe, K.Miyamoto, N.Tochio, S.Koshiba, T.Kigawa, S.Yokoyama, Rike Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Tripartite Motif-Containing Protein 5
Chain: A
Fragment: Zinc Finger, C3hc4 Type (Ring Finger)
Synonym: Ring Finger Protein 88
Ec: 6.3.2.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trim5, Rnf88
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060411-09
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme Ligase E.C.6.3.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (423 Kb) [Save to disk]
  • Biological Unit Coordinates (2ecv.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2ECV
  • CSU: Contacts of Structural Units for 2ECV
  • Original NMR restraints for 2ECV from PDB
  • Retrieve 2ECV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ECV from S2C, [Save to disk]
    • View 2ECV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ECV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ECV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ecv_A] [2ecv]
  • SWISS-PROT database: [Q9C035]
  • Domain organization of [TRIM5_HUMAN] by SWISSPFAM
  • Domain found in 2ECV: [RING ] by SMART
    • Other resources with information on 2ECV
  • Community annotation for 2ECV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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