2EDO Cell Adhesion date Feb 14, 2007
title Solution Structure Of The First Ig-Like Domain From Human Cd
authors K.Nagashima, T.Nagashima, M.Yoshida, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Cd48 Antigen
Chain: A
Fragment: V-Set
Synonym: B-Lymphocyte Activation Marker Blast-1, Bcm1 Surfa Antigen, Leukocyte Antigen Mem-102, Tct.1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd48, Bcm1, Blast1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060411-11
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (666 Kb) [Save to disk]
  • Biological Unit Coordinates (2edo.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 2EDO
  • Original NMR restraints for 2EDO from PDB
  • Retrieve 2EDO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EDO from S2C, [Save to disk]
    • View 2EDO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2EDO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EDO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2edo] [2edo_A]
  • SWISS-PROT database: [P09326]
  • Domain organization of [CD48_HUMAN] by SWISSPFAM
  • Domain found in 2EDO: [IG ] by SMART
    • Other resources with information on 2EDO
  • Community annotation for 2EDO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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