2EDP Structural Protein date Feb 14, 2007
title Solution Structure Of The Pdz Domain From Human Shroom Famil
authors H.Endo, M.Yoshida, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Shroom Family Member 4
Chain: A
Fragment: Pdz Domain
Synonym: Fragment
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa1202
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050627-31
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (500 Kb) [Save to disk]
  • Biological Unit Coordinates (2edp.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 2EDP
  • Original NMR restraints for 2EDP from PDB
  • Retrieve 2EDP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EDP from S2C, [Save to disk]
    • View 2EDP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2EDP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EDP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2edp_A] [2edp]
  • SWISS-PROT database: [Q9ULL8]
  • Domain organization of [SHRM4_HUMAN] by SWISSPFAM
  • Domain found in 2EDP: [PDZ ] by SMART
    • Other resources with information on 2EDP
  • Community annotation for 2EDP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science