2EDX Signaling Protein date Feb 15, 2007
title Solution Structures Of The Fn3 Domain Of Human Receptor-Type Protein Phosphatase F
authors M.Sato, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structura Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Protein Tyrosine Phosphatase, Receptor Type, F
Chain: A
Fragment: Fibronectin Type III Domain
Synonym: Receptor-Type Tyrosine-Protein Phosphatase F
Ec: 3.1.3.48
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptprf
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P051003-06
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (659 Kb) [Save to disk]
  • Biological Unit Coordinates (2edx.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 2EDX
  • Original NMR restraints for 2EDX from PDB
  • Retrieve 2EDX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EDX from S2C, [Save to disk]
    • View 2EDX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2EDX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EDX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2edx_A] [2edx]
  • SWISS-PROT database: [P10586]
  • Domain organization of [PTPRF_HUMAN] by SWISSPFAM
  • Domain found in 2EDX: [FN3 ] by SMART
    • Other resources with information on 2EDX
  • Community annotation for 2EDX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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