2EFK Endocytosis Exocytosis date Feb 23, 2007
title Crystal Structure Of The Efc Domain Of Cdc42-Interacting Pro
authors A.Shimada, H.Niwa, L.Chen, Z.J.Liu, B.C.Wang, T.Terada, M.Shirou S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Cdc42-Interacting Protein 4
Chain: A
Fragment: Efc Domain, Residues 10-303
Synonym: Thyroid Receptor-Interacting Protein 10, Trip-10, Felic, Salt-Tolerant Protein, Hstp, Cip4;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system_vector_type: Plasmid
Other_details: Cell-Free Protein Synthesis
symmetry Space Group: C 1 2 1
R_factor 0.228 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.817 70.410 65.679 90.00 107.20 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCurved EFC/F-BAR-Domain Dimers Are Joined End to End into a Filament for Membrane Invagination in Endocytosis., Shimada A, Niwa H, Tsujita K, Suetsugu S, Nitta K, Hanawa-Suetsugu K, Akasaka R, Nishino Y, Toyama M, Chen L, Liu ZJ, Wang BC, Yamamoto M, Terada T, Miyazawa A, Tanaka A, Sugano S, Shirouzu M, Nagayama K, Takenawa T, Yokoyama S, Cell. 2007 May 18;129(4):761-72. PMID:17512409
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (2efk.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 2EFK
  • CSU: Contacts of Structural Units for 2EFK
  • Likely Quarternary Molecular Structure file(s) for 2EFK
  • Structure Factors (127 Kb)
  • Retrieve 2EFK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EFK from S2C, [Save to disk]
  • Re-refined 2efk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2EFK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2EFK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EFK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2efk] [2efk_A]
  • SWISS-PROT database: [Q15642]
  • Domain organization of [CIP4_HUMAN] by SWISSPFAM
  • Domain found in 2EFK: [FCH ] by SMART
    • Other resources with information on 2EFK
  • Community annotation for 2EFK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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