2EGQ Structural Protein date Mar 01, 2007
title Solution Structure Of The Fourth Lim Domain From Human Four And A Half Lim Domains 1
authors K.Inoue, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Fhl1 Protein
Chain: A
Fragment: Lim Domain
Synonym: Four And A Half Lim Domains Protein 1, Skeletal Muscle Lim-Protein 1, Slim 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fhl1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060515-04
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (384 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2EGQ
  • CSU: Contacts of Structural Units for 2EGQ
  • Retrieve 2EGQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EGQ from S2C, [Save to disk]
  • View 2EGQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EGQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2EGQ, from MSDmotif at EBI
  • Fold representative 2egq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2egq_A] [2egq]
  • SWISS-PROT database: [Q13642] [Q6IB30]
  • Domain organization of [FHL1_HUMAN] [Q6IB30_HUMAN] by SWISSPFAM
  • Domain found in 2EGQ: [LIM ] by SMART
  • Alignments of the sequence of 2EGQ with the sequences similar proteins can be viewed for 2EGQ's classification [FHL1_HUMAN] [Q6IB30_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FHL1_HUMAN] [Q6IB30_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2EGQ
  • Community annotation for 2EGQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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